If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 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'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 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'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 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'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ), 'gf_id' => 'HOM05D000657', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000657' ), 'data_identifier' => 'HOM05D000657', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000657', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05680' => 'bna', 'A02p24620' => 'bna', 'A02p24630' => 'bna', 'A03p31120' => 'bna', 'A09p01820' => 'bna', 'A09p01830' => 'bna', 'A09p49510' => 'bna', 'A09p68510' => 'bna', 'A10p20110' => 'bna', 'Aa31LG1G8720' => 'aar', 'Aa31LG1G9770' => 'aar', 'Aa31LG3G1090' => 'aar', 'Aa31LG4G9860' => 'aar', 'Aa31LG5G1990' => 'aar', 'Aa31LG5G2000' => 'aar', 'Aa31LG5G2010' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3027' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1444' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1225' => 'aag', 'Actinidia01492' => 'ach', 'Actinidia09407' => 'ach', 'Actinidia17699' => 'ach', 'Actinidia20342' => 'ach', 'Actinidia21038' => 'ach', 'Actinidia25807' => 'ach', 'Actinidia25808' => 'ach', 'Actinidia25809' => 'ach', 'Ah.03g143330' => 'amhyb', 'Ah.04g150690' => 'amhyb', 'Ah.08g213320' => 'amhyb', 'Ah.08g213330' => 'amhyb', 'Ah.14g081590' => 'amhyb', 'Ah.14g081610' => 'amhyb', 'Ah.15g093030' => 'amhyb', 'Ah.15g093100' => 'amhyb', 'Ah.15g093110' => 'amhyb', 'AL1G12190' => 'aly', 'AL1G12200' => 'aly', 'AL5G38010' => 'aly', 'AL6G31100' => 'aly', 'AL6G50750' => 'aly', 'AL6G50760' => 'aly', 'AL6G50770' => 'aly', 'Aqoxy204s004' => 'aox', 'Aqoxy204s005' => 'aox', 'Aqoxy29s001' => 'aox', 'Aqoxy2G02924' => 'aox', 'Aqoxy2G02928' => 'aox', 'Aqoxy3G00394' => 'aox', 'Aqoxy3G01683' => 'aox', 'Aqoxy4G00958' => 'aox', 'Aqoxy5G00767' => 'aox', 'Aqoxy5G00768' => 'aox', 'arahy.Tifrunner.gnm1.ann1.415NE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54CHXN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56K58S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.84HKK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9639NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK7L4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E9EDNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGUL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G12UJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HM8GZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU5GKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M9PXLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8YCK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VMAC12' => 'arhy', 'AT1G02813' => 'ath', 'AT1G02816' => 'ath', 'AT3G56640' => 'ath', 'AT4G02350' => 'ath', 'AT4G02360' => 'ath', 'AT4G02370' => 'ath', 'AT5G19590' => 'ath', 'ATR0561G052' => 'atr', 'ATR0598G296' => 'atr', 'ATR0605G220' => 'atr', 'ATR0743G130' => 'atr', 'ATR0796G099' => 'atr', 'ATR0796G335' => 'atr', 'ATR0820G025' => 'atr', 'ATR1089G021' => 'atr', 'Atru.chr1.1290' => 'acertr', 'Atru.chr2.84' => 'acertr', 'Atru.chr5.1125' => 'acertr', 'Atru.chr5.1126' => 'acertr', 'Atru.chr5.1127' => 'acertr', 'Atru.chr5.1128' => 'acertr', 'Atru.chr7.1309' => 'acertr', 'AUR62008682' => 'cqu', 'AUR62008683' => 'cqu', 'AUR62008684' => 'cqu', 'AUR62011016' => 'cqu', 'AUR62018387' => 'cqu', 'AUR62025560' => 'cqu', 'AUR62025561' => 'cqu', 'AUR62030275' => 'cqu', 'AUR62044267' => 'cqu', 'AUR62044268' => 'cqu', 'AUR62044269' => 'cqu', 'BcaB01g02053' => 'bca', 'BcaB01g02054' => 'bca', 'BcaB01g02441' => 'bca', 'BcaB02g07115' => 'bca', 'BcaB03g15763' => 'bca', 'BcaB05g23394' => 'bca', 'BcaB05g23396' => 'bca', 'BcaB05g23617' => 'bca', 'BcaB05g23618' => 'bca', 'BcaC01g06765' => 'bca', 'BcaC02g08499' => 'bca', 'BcaC03g13691' => 'bca', 'BcaC03g13693' => 'bca', 'BcaC03g16115' => 'bca', 'BcaC03g16116' => 'bca', 'BcaC05g24592' => 'bca', 'BcaC07g39972' => 'bca', 'BcaC07g40129' => 'bca', 'BcaC07g40134' => 'bca', 'BcaC07g42409' => 'bca', 'BcaNung04045' => 'bca', 'BcaNung04046' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02270' => 'bna', 'BolC2t06973H' => 'bol', 'BolC2t09901H' => 'bol', 'BolC2t09902H' => 'bol', 'BolC3t16080H' => 'bol', 'BolC8t50808H' => 'bol', 'BolC8t52827H' => 'bol', 'BolC9t53122H' => 'bol', 'BolC9t53123H' => 'bol', 'BolC9t58523H' => 'bol', 'BraA02t05520Z' => 'bra', 'BraA02t07454Z' => 'bra', 'BraA02t07455Z' => 'bra', 'BraA09t35836Z' => 'bra', 'BraA09t35837Z' => 'bra', 'BraA09t40404Z' => 'bra', 'BraA09t42194Z' => 'bra', 'BraA10t44085Z' => 'bra', 'C02p38860' => 'bna', 'C02p38870' => 'bna', 'C03p37930' => 'bna', 'C04p35860' => 'bna', 'C08p31910' => 'bna', 'C08p53120' => 'bna', 'C09p01870' => 'bna', 'C09p01880' => 'bna', 'C09p56580' => 'bna', 'CAN.G1280.6' => 'can', 'CAN.G1710.10' => 'can', 'CAN.G181.58' => 'can', 'CAN.G1989.2' => 'can', 'CAN.G472.13' => 'can', 'CAN.G472.15' => 'can', 'CAN.G472.16' => 'can', 'CAN.G472.17' => 'can', 'CAN.G947.17' => 'can', 'CANSAT01G2169' => 'cansat', 'CANSAT11G1561' => 'cansat', 'CANSAT25G0459' => 'cansat', 'CANSAT25G1131' => 'cansat', 'CANSAT25G2454' => 'cansat', 'CANSAT25G3678' => 'cansat', 'CANSAT54G2679' => 'cansat', 'CANSAT56G1637' => 'cansat', 'CARHR002120' => 'chi', 'CARHR002130' => 'chi', 'CARHR034320' => 'chi', 'CARHR159510' => 'chi', 'CARHR166750' => 'chi', 'CARHR193310' => 'chi', 'CARHR250540' => 'chi', 'CARHR250550' => 'chi', 'CARHR250560' => 'chi', 'Carub.0001s0191' => 'cru', 'Carub.0001s0192' => 'cru', 'Carub.0005s2339' => 'cru', 'Carub.0006s1794' => 'cru', 'Carub.0006s3480' => 'cru', 'Carub.0006s3481' => 'cru', 'Carub.0006s3482' => 'cru', 'Ca_09180_v3' => 'car', 'Ca_10296_v3' => 'car', 'Ca_10324_v3' => 'car', 'Ca_10325_v3' => 'car', 'Ca_14204_v3' => 'car', 'Ca_25516_v3' => 'car', 'Ca_26321_v3' => 'car', 'Ca_30607_v3' => 'car', 'Cc01_g20980' => 'ccan', 'Cc01_g20990' => 'ccan', 'Cc01_g21000' => 'ccan', 'Cc06_g09400' => 'ccan', 'Cc06_g09430' => 'ccan', 'Cc06_g20210' => 'ccan', 'CDE01G0489' => 'cde', 'CDE02G2931' => 'cde', 'CDE02G4686' => 'cde', 'CDE04G1769' => 'cde', 'CDE08G1425' => 'cde', 'CDE11G1092' => 'cde', 'CDE12G0552' => 'cde', 'Cfa003285' => 'cfa', 'Cfa005896' => 'cfa', 'Cfa005897' => 'cfa', 'Cfa005898' => 'cfa', 'Cfa005899' => 'cfa', 'Cfa006642' => 'cfa', 'Cfa008649' => 'cfa', 'Cfa019969' => 'cfa', 'Cfa024678' => 'cfa', 'Ciclev10002676m.g' => 'ccl', 'Ciclev10009804m.g' => 'ccl', 'Ciclev10011104m.g' => 'ccl', 'Ciclev10012682m.g' => 'ccl', 'Ciclev10022547m.g' => 'ccl', 'Ciclev10022576m.g' => 'ccl', 'Ciclev10024146m.g' => 'ccl', 'CiPaw.01G027800' => 'cil', 'CiPaw.03G234600' => 'cil', 'CiPaw.07G022900' => 'cil', 'CiPaw.07G110500' => 'cil', 'CiPaw.07G110600' => 'cil', 'CiPaw.08G094100' => 'cil', 'CiPaw.08G094200' => 'cil', 'CiPaw.08G094300' => 'cil', 'CiPaw.08G160800' => 'cil', 'CiPaw.09G050700' => 'cil', 'CiPaw.10G043100' => 'cil', 'ClCG06G010340' => 'cla', 'ClCG06G010360' => 'cla', 'ClCG09G005650' => 'cla', 'ClCG09G005670' => 'cla', 'ClCG10G016430' => 'cla', 'COL.COLO4_10538' => 'col', 'COL.COLO4_15487' => 'col', 'COL.COLO4_15489' => 'col', 'COL.COLO4_15490' => 'col', 'COL.COLO4_23327' => 'col', 'COL.COLO4_23328' => 'col', 'COL.COLO4_37649' => 'col', 'Cpa.g.sc151.13' => 'cpa', 'Cpa.g.sc23.128' => 'cpa', 'Cpa.g.sc48.104' => 'cpa', 'Cpa.g.sc9.248' => 'cpa', 'Cpa.g.sc9.249' => 'cpa', 'Cpa.g.sc9.250' => 'cpa', 'Cpa.g.sc92.66' => 'cpa', 'Cre07.g317800' => 'cre', 'CsaV3_1G030790' => 'csa', 'CsaV3_3G018420' => 'csa', 'CsaV3_3G039900' => 'csa', 'CsaV3_7G029340' => 'csa', 'CsaV3_7G029350' => 'csa', 'CsaV3_7G029390' => 'csa', 'CSS0001796' => 'camsi', 'CSS0006263' => 'camsi', 'CSS0010266' => 'camsi', 'CSS0017222' => 'camsi', 'CSS0017483' => 'camsi', 'CSS0020277' => 'camsi', 'CSS0023789' => 'camsi', 'CSS0024203' => 'camsi', 'CSS0025422' => 'camsi', 'CSS0031963' => 'camsi', 'CSS0037234' => 'camsi', 'CSS0046855' => 'camsi', 'DCAR_002844' => 'dca', 'DCAR_002846' => 'dca', 'DCAR_002847' => 'dca', 'DCAR_005438' => 'dca', 'DCAR_009123' => 'dca', 'DCAR_013536' => 'dca', 'DCAR_024064' => 'dca', 'Dinv19678' => 'din', 'Dinv19682' => 'din', 'Dinv25073' => 'din', 'Dinv25932' => 'din', 'Dinv25933' => 'din', 'Dinv30833' => 'din', 'Dinv33062' => 'din', 'Dinv33063' => 'din', 'Dinv36120' => 'din', 'Dinv36608' => 'din', 'Dinv40353' => 'din', 'Dinv41581' => 'din', 'Duzib106G0686' => 'dzi', 'Duzib116G0821' => 'dzi', 'Duzib128G1520' => 'dzi', 'Duzib133G0549' => 'dzi', 'Duzib138G0691' => 'dzi', 'Duzib138G1091' => 'dzi', 'Duzib138G1475' => 'dzi', 'Duzib150G0333' => 'dzi', 'Duzib177G1114' => 'dzi', 'Duzib187G1322' => 'dzi', 'Duzib211G0257' => 'dzi', 'Duzib211G0324' => 'dzi', 'ECA234G0888' => 'eca', 'ECA236G1902' => 'eca', 'ECA236G3436' => 'eca', 'ECA236G4217' => 'eca', 'ECA236G4778' => 'eca', 'ECA247G2893' => 'eca', 'ECA248G1535' => 'eca', 'ECA248G3463' => 'eca', 'EL10Ac3g07278' => 'bvu', 'EL10Ac7g17534' => 'bvu', 'EL10Ac7g17536' => 'bvu', 'EL10Ac8g18525' => 'bvu', 'Eucgr.A00308' => 'egr', 'Eucgr.A02198' => 'egr', 'Eucgr.C01071' => 'egr', 'Eucgr.H01100' => 'egr', 'Eucgr.H01101' => 'egr', 'Eucgr.H01102' => 'egr', 'Eucgr.H04548' => 'egr', 'Eucgr.L02245' => 'egr', 'Eucgr.L02246' => 'egr', 'FAN04G1502' => 'fan', 'FAN08G0239' => 'fan', 'FAN09G0461' => 'fan', 'FAN13G1101' => 'fan', 'FAN14G0545' => 'fan', 'FAN15G1975' => 'fan', 'FAN18G0618' => 'fan', 'FAN18G3901' => 'fan', 'FAN19G0196' => 'fan', 'FAN19G1888' => 'fan', 'FAN20G1812' => 'fan', 'FAN20G2253' => 'fan', 'FAN20G2927' => 'fan', 'FAN23G1397' => 'fan', 'FAN24G1811' => 'fan', 'FAN24G1911' => 'fan', 'FAN24G2606' => 'fan', 'FAN24G3483' => 'fan', 'FAN26G2476' => 'fan', 'FAN26G2909' => 'fan', 'FAN26G2949' => 'fan', 'FAN27G0014' => 'fan', 'FAN27G0988' => 'fan', 'FAN27G2091' => 'fan', 'FAN27G2777' => 'fan', 'FAN28G2329' => 'fan', 'FvH4_1g05270' => 'fve', 'FvH4_2g25870' => 'fve', 'FvH4_2g25880' => 'fve', 'FvH4_2g25890' => 'fve', 'FvH4_2g25910' => 'fve', 'FvH4_3g29381' => 'fve', 'FvH4_4g18593' => 'fve', 'FvH4_5g19480' => 'fve', 'FvH4_6g35730' => 'fve', 'FvH4_7g09100' => 'fve', 'Glyma.02G016900' => 'gma', 'Glyma.02G017000' => 'gma', 'Glyma.02G160300' => 'gma', 'Glyma.03G089100' => 'gma', 'Glyma.03G215100' => 'gma', 'Glyma.03G215200' => 'gma', 'Glyma.05G069800' => 'gma', 'Glyma.07G088900' => 'gma', 'Glyma.09G188100' => 'gma', 'Glyma.10G017400' => 'gma', 'Glyma.10G017500' => 'gma', 'Glyma.10G112400' => 'gma', 'Glyma.14G001400' => 'gma', 'Glyma.16G084100' => 'gma', 'Glyma.18G113900' => 'gma', 'Glyma.19G211700' => 'gma', 'Gohir.A05G021600' => 'ghi', 'Gohir.A05G250300' => 'ghi', 'Gohir.A08G076900' => 'ghi', 'Gohir.A08G077000' => 'ghi', 'Gohir.A08G208300' => 'ghi', 'Gohir.A11G113900' => 'ghi', 'Gohir.A11G268800' => 'ghi', 'Gohir.A12G129500' => 'ghi', 'Gohir.A12G129600' => 'ghi', 'Gohir.A12G129700' => 'ghi', 'Gohir.A13G120900' => 'ghi', 'Gohir.D05G023100' => 'ghi', 'Gohir.D05G253500' => 'ghi', 'Gohir.D08G086500' => 'ghi', 'Gohir.D08G086600' => 'ghi', 'Gohir.D08G225100' => 'ghi', 'Gohir.D10G144250' => 'ghi', 'Gohir.D11G118900' => 'ghi', 'Gohir.D11G119000' => 'ghi', 'Gohir.D11G278900' => 'ghi', 'Gohir.D12G133300' => 'ghi', 'Gohir.D12G133400' => 'ghi', 'Gohir.D12G133500' => 'ghi', 'Gohir.D13G124900' => 'ghi', 'Gohir.D13G133033' => 'ghi', 'Gorai.001G201000' => 'gra', 'Gorai.004G090900' => 'gra', 'Gorai.004G091000' => 'gra', 'Gorai.004G239100' => 'gra', 'Gorai.007G127400' => 'gra', 'Gorai.007G127500' => 'gra', 'Gorai.007G301100' => 'gra', 'Gorai.008G144200' => 'gra', 'Gorai.008G144400' => 'gra', 'Gorai.008G144500' => 'gra', 'Gorai.009G023300' => 'gra', 'Gorai.009G263500' => 'gra', 'Gorai.013G139700' => 'gra', 'GSVIVG01025793001' => 'vvi', 'GSVIVG01028035001' => 'vvi', 'GSVIVG01031173001' => 'vvi', 'GSVIVG01031177001' => 'vvi', 'GSVIVG01031179001' => 'vvi', 'HanXRQChr01g0001031' => 'han', 'HanXRQChr04g0114821' => 'han', 'HanXRQChr04g0114841' => 'han', 'HanXRQChr04g0114851' => 'han', 'HanXRQChr06g0164561' => 'han', 'HanXRQChr06g0178481' => 'han', 'HanXRQChr07g0192701' => 'han', 'HanXRQChr10g0284981' => 'han', 'HanXRQChr10g0287821' => 'han', 'HanXRQChr10g0295721' => 'han', 'HanXRQChr10g0317781' => 'han', 'HanXRQChr13g0388011' => 'han', 'HanXRQChr13g0422391' => 'han', 'HanXRQChr15g0465571' => 'han', 'Haze_04124' => 'cav', 'Haze_04953' => 'cav', 'Haze_04954' => 'cav', 'Haze_04955' => 'cav', 'Haze_04959' => 'cav', 'Haze_20267' => 'cav', 'Haze_25688' => 'cav', 'Haze_27638' => 'cav', 'Hma1.2p1_0232F.1_g097955' => 'hma', 'Hma1.2p1_0491F.1_g164700' => 'hma', 'Hma1.2p1_0494F.1_g165260' => 'hma', 'Hma1.2p1_0494F.1_g165270' => 'hma', 'Hma1.2p1_0494F.1_g165280' => 'hma', 'Hma1.2p1_0494F.1_g165290' => 'hma', 'Hma1.2p1_0494F.1_g165300' => 'hma', 'Hma1.2p1_0494F.1_g165310' => 'hma', 'Hma1.2p1_0518F.1_g171320' => 'hma', 'Hma1.2p1_3596F.1_g336946' => 'hma', 'HPP92_001201' => 'vpl', 'HPP92_009211' => 'vpl', 'HPP92_010679' => 'vpl', 'HPP92_013724' => 'vpl', 'HPP92_022768' => 'vpl', 'Hund24549' => 'sun', 'Lalb_Chr01g0010381' => 'lal', 'Lalb_Chr02g0146441' => 'lal', 'Lalb_Chr02g0151471' => 'lal', 'Lalb_Chr14g0371361' => 'lal', 'Lalb_Chr15g0078471' => 'lal', 'Lalb_Chr15g0078481' => 'lal', 'Lalb_Chr18g0046941' => 'lal', 'Lalb_Chr20g0108931' => 'lal', 'Lalb_Chr20g0108941' => 'lal', 'Lalb_Chr20g0115141' => 'lal', 'Lalb_Chr21g0309261' => 'lal', 'Lalb_Chr21g0309281' => 'lal', 'Lalb_Chr22g0352961' => 'lal', 'Lj1A23T82' => 'lonja', 'Lj1E1056T0' => 'lonja', 'Lj1g0020883' => 'lja', 'Lj1g0025716' => 'lja', 'Lj1P1056T36' => 'lonja', 'Lj1P741T21' => 'lonja', 'Lj2C1196T15' => 'lonja', 'Lj2C1196T16' => 'lonja', 'Lj2g0019301' => 'lja', 'Lj2P110T31' => 'lonja', 'Lj2P110T33' => 'lonja', 'Lj2P1197T40' => 'lonja', 'Lj5g0010537' => 'lja', 'Lj5g0015096' => 'lja', 'Lj5g0019150' => 'lja', 'Lj5g0026037' => 'lja', 'Lj5g0027753' => 'lja', 'Lj7P645T28' => 'lonja', 'Lj9P189T12' => 'lonja', 'Lsat_1_v5_gn_0_45680' => 'lsa', 'Lsat_1_v5_gn_5_100120' => 'lsa', 'Lsat_1_v5_gn_5_157741' => 'lsa', 'Lsat_1_v5_gn_5_190920' => 'lsa', 'Lsat_1_v5_gn_8_163840' => 'lsa', 'Lsat_1_v5_gn_8_163860' => 'lsa', 'Lsat_1_v5_gn_9_5481' => 'lsa', 'Manes.01G220500' => 'mes', 'Manes.01G220700' => 'mes', 'Manes.01G220800' => 'mes', 'Manes.01G221100' => 'mes', 'Manes.03G068700' => 'mes', 'Manes.08G062900' => 'mes', 'Manes.09G171800' => 'mes', 'Mapoly0036s0016' => 'mpo', 'Mapoly0043s0130' => 'mpo', 'MBI03_g29111_MAGBIO' => 'mbi', 'MBI04_g25410_MAGBIO' => 'mbi', 'MBI06_g32164_MAGBIO' => 'mbi', 'MBI13_g00887_MAGBIO' => 'mbi', 'MBI18_g24874_MAGBIO' => 'mbi', 'MBI19_g04346_MAGBIO' => 'mbi', 'MCO06G278' => 'mco', 'MD02G1056100' => 'mdo', 'MD03G1290000' => 'mdo', 'MD03G1290100' => 'mdo', 'MD03G1290200' => 'mdo', 'MD03G1290300' => 'mdo', 'MD03G1290400' => 'mdo', 'MD03G1290500' => 'mdo', 'MD11G1308000' => 'mdo', 'MD11G1308100' => 'mdo', 'MD11G1308200' => 'mdo', 'MD11G1308300' => 'mdo', 'MD13G1069100' => 'mdo', 'MD15G1188900' => 'mdo', 'MD16G1069400' => 'mdo', 'Medtr1g050505' => 'mtr', 'Medtr1g087380' => 'mtr', 'Medtr1g088250' => 'mtr', 'Medtr1g088260' => 'mtr', 'Medtr6g086680' => 'mtr', 'Medtr7g108775' => 'mtr', 'Medtr7g108785' => 'mtr', 'MELO3C000736.2' => 'cme', 'MELO3C009734.2' => 'cme', 'MELO3C015989.2' => 'cme', 'MELO3C015993.2' => 'cme', 'MELO3C015994.2' => 'cme', 'MELO3C019522.2' => 'cme', 'MELO3C025322.2' => 'cme', 'Migut.D00142' => 'egut', 'Migut.J01136' => 'egut', 'Migut.J01182' => 'egut', 'Migut.K00154' => 'egut', 'Migut.N01509' => 'egut', 'Migut.N01510' => 'egut', 'Migut.N01511' => 'egut', 'Migut.O00482' => 'egut', 'Migut.O00483' => 'egut', 'MSTRG.10781' => 'ama', 'MSTRG.17400' => 'ama', 'MSTRG.18142' => 'ama', 'MSTRG.18143' => 'ama', 'MSTRG.19594' => 'ama', 'MSTRG.26174' => 'ama', 'Nitab4.5_0000116g0460' => 'nta', 'Nitab4.5_0000116g0470' => 'nta', 'Nitab4.5_0001159g0080' => 'nta', 'Nitab4.5_0001327g0050' => 'nta', 'Nitab4.5_0001672g0140' => 'nta', 'Nitab4.5_0002820g0030' => 'nta', 'Nitab4.5_0003537g0050' => 'nta', 'Nitab4.5_0003537g0070' => 'nta', 'Nitab4.5_0004367g0120' => 'nta', 'Nitab4.5_0005805g0060' => 'nta', 'Nitab4.5_0006459g0010' => 'nta', 'Nitab4.5_0006459g0020' => 'nta', 'Nitab4.5_0007333g0020' => 'nta', 'Nitab4.5_0007333g0030' => 'nta', 'Nitab4.5_0010236g0010' => 'nta', 'Nitab4.5_0010236g0030' => 'nta', 'Nn2g11808' => 'nnu', 'Nn2g14737' => 'nnu', 'Nn3g18493' => 'nnu', 'Nn3g21520' => 'nnu', 'Nn4g25041' => 'nnu', 'Nn4g25775' => 'nnu', 'Nn4g25776' => 'nnu', 'Nn4g25777' => 'nnu', 'Nn5g27363' => 'nnu', 'Nn5g29674' => 'nnu', 'Nn7g36951' => 'nnu', 'Nn8g39255' => 'nnu', 'Oeu010664.1' => 'oeu', 'Oeu018263.1' => 'oeu', 'Oeu022989.1' => 'oeu', 'Oeu037586.1' => 'oeu', 'Oeu044241.1' => 'oeu', 'Oeu048330.1' => 'oeu', 'Oeu048331.1' => 'oeu', 'Oeu053604.1' => 'oeu', 'Oeu054117.1' => 'oeu', 'Oeu054119.1' => 'oeu', 'Oeu057807.1' => 'oeu', 'Os01g0351300' => 'osa', 'Os01g0595400' => 'osa', 'Os03g0163500' => 'osa', 'Os05g0362300' => 'osa', 'Os05g0362500' => 'osa', 'Os05g0421100' => 'osa', 'Os10g0415200' => 'osa', 'Os11g0241200' => 'osa', 'Os11g0241700' => 'osa', 'Os11g0241832' => 'osa', 'Os12g0198000' => 'osa', 'Peaxi162Scf00001g00402' => 'pax', 'Peaxi162Scf00001g00403' => 'pax', 'Peaxi162Scf00001g04022' => 'pax', 'Peaxi162Scf00076g00031' => 'pax', 'Peaxi162Scf00399g00510' => 'pax', 'Peaxi162Scf00546g00328' => 'pax', 'Peaxi162Scf00673g00447' => 'pax', 'Peaxi162Scf01944g00002' => 'pax', 'Peaxi162Scf01944g00016' => 'pax', 'PGR003G0012' => 'pgr', 'PGR003G0014' => 'pgr', 'PGR031G1708' => 'pgr', 'PGR042G1216' => 'pgr', 'PGR044G1284' => 'pgr', 'PGR119G0276' => 'pgr', 'PGR119G1516' => 'pgr', 'PGR119G1600' => 'pgr', 'PGR119G1817' => 'pgr', 'PGR142G1292' => 'pgr', 'PGSC0003DMG400000384' => 'stu', 'PGSC0003DMG400017931' => 'stu', 'PGSC0003DMG400029375' => 'stu', 'PGSC0003DMG400031815' => 'stu', 'PGSC0003DMG400031838' => 'stu', 'Phvul.001G208000' => 'pvu', 'Phvul.001G208100' => 'pvu', 'Phvul.004G161200' => 'pvu', 'Phvul.007G218600' => 'pvu', 'Phvul.007G246900' => 'pvu', 'Phvul.007G247400' => 'pvu', 'Phvul.010G030700' => 'pvu', 'Potri.002G203200' => 'ptr', 'Potri.002G203400' => 'ptr', 'Potri.005G024000' => 'ptr', 'Potri.006G034200' => 'ptr', 'Potri.006G158952' => 'ptr', 'Potri.013G014600' => 'ptr', 'Potri.014G127400' => 'ptr', 'Potri.014G127500' => 'ptr', 'Potri.014G127600' => 'ptr', 'Potri.016G032100' => 'ptr', 'Pp3c16_1100' => 'ppa', 'Pp3c23_7860' => 'ppa', 'Pp3c27_3270' => 'ppa', 'PRCOL_00002300' => 'pco', 'Prupe.1G277600' => 'ppe', 'Prupe.7G227700' => 'ppe', 'Prupe.8G263200' => 'ppe', 'Prupe.8G263300' => 'ppe', 'Prupe.8G263400' => 'ppe', 'Prupe.8G263500' => 'ppe', 'Psat1g039680' => 'psa', 'Psat1g067840' => 'psa', 'Psat1g067880' => 'psa', 'Psat2g132600' => 'psa', 'Psat3g021640' => 'psa', 'Psat3g021680' => 'psa', 'Psat6g130280' => 'psa', 'Psat6g139720' => 'psa', 'Psat6g162560' => 'psa', 'Psat6g164560' => 'psa', 'PSO063G4967' => 'pso', 'PSO170G0313' => 'pso', 'PSO170G2204' => 'pso', 'PSO170G3968' => 'pso', 'PSO210G6394' => 'pso', 'PSO210G7374' => 'pso', 'PSO339G3542' => 'pso', 'PSO384G1507' => 'pso', 'PSO407G0128' => 'pso', 'PSO407G0226' => 'pso', 'PSO782G0402' => 'pso', 'PSO832G0046' => 'pso', 'PSO832G3192' => 'pso', 'QL01p054456' => 'qlo', 'QL02p085934' => 'qlo', 'QL03p019878' => 'qlo', 'QL04p026869' => 'qlo', 'QL05p045626' => 'qlo', 'QL07p011436' => 'qlo', 'QL07p012961' => 'qlo', 'QL09p011160' => 'qlo', 'QL09p053794' => 'qlo', 'QL11p023624' => 'qlo', 'QL11p047907' => 'qlo', 'QL12p028253' => 'qlo', 'QL12p028260' => 'qlo', 'QL12p028265' => 'qlo', 'QL12p028275' => 'qlo', 'RcHm_v2.0_Chr2g0090991' => 'rch', 'RcHm_v2.0_Chr6g0294201' => 'rch', 'RcHm_v2.0_Chr6g0294211' => 'rch', 'RcHm_v2.0_Chr6g0294221' => 'rch', 'RcHm_v2.0_Chr6g0294231' => 'rch', 'RcHm_v2.0_Chr7g0204061' => 'rch', 'Rhsim01G0092000' => 'rsi', 'Rhsim01G0286300' => 'rsi', 'Rhsim01G0286400' => 'rsi', 'Rhsim01G0286500' => 'rsi', 'Rhsim04G0115300' => 'rsi', 'Rhsim05G0039800' => 'rsi', 'Rhsim05G0137600' => 'rsi', 'Rhsim07G0191500' => 'rsi', 'Rhsim07G0203200' => 'rsi', 'RhsimUnG0216700' => 'rsi', 'RhsimUnG0219900' => 'rsi', 'Sabra02G0156000' => 'sbr', 'Sabra02G0156100' => 'sbr', 'Sabra02G0156200' => 'sbr', 'Sabra05G0029400' => 'sbr', 'Sabra06G0022600' => 'sbr', 'Sabra06G0039400' => 'sbr', 'Sabra14G0094800' => 'sbr', 'Sabra16G0035500' => 'sbr', 'SalBow1G3501' => 'sbo', 'SalBow2G0842' => 'sbo', 'SalBow2G1695' => 'sbo', 'SalBow3G1039' => 'sbo', 'SalBow6G2161' => 'sbo', 'SalBow6G3964' => 'sbo', 'Sc05g0003710' => 'sci', 'Sc05g0003720' => 'sci', 'Sc08g0007230' => 'sci', 'Sc13g0000930' => 'sci', 'Sc17g0003220' => 'sci', 'Sc17g0003230' => 'sci', 'Sc18g0001080' => 'sci', 'Sc24g0000900' => 'sci', 'Sc24g0000910' => 'sci', 'Sed0005354' => 'sed', 'Sed0013016' => 'sed', 'Sed0013293' => 'sed', 'Sed0014096' => 'sed', 'Sed0016545' => 'sed', 'Sed0022619' => 'sed', 'Sed0025798' => 'sed', 'Sed0026466' => 'sed', 'SEGI_04436' => 'sgi', 'SEGI_04883' => 'sgi', 'SEGI_08451' => 'sgi', 'SEGI_16995' => 'sgi', 'SEGI_21562' => 'sgi', 'SEGI_22785' => 'sgi', 'SEGI_32313' => 'sgi', 'SEGI_37832' => 'sgi', 'SEGI_38052' => 'sgi', 'SGA_v2.0_scaffold106G30541' => 'sas', 'SGA_v2.0_scaffold1G00357' => 'sas', 'SGA_v2.0_scaffold229G43314' => 'sas', 'SGA_v2.0_scaffold2G01388' => 'sas', 'SGA_v2.0_scaffold36G14337' => 'sas', 'SHI09957' => 'shi', 'SHI15063' => 'shi', 'SHI15128' => 'shi', 'SHI24552' => 'shi', 'SMO112G0118' => 'smo', 'SMO298G0004' => 'smo', 'SMO364G0607' => 'smo', 'Solyc06g009150.1' => 'sly', 'Solyc09g075220.1' => 'sly', 'Solyc09g075230.1' => 'sly', 'Solyc09g075270.1' => 'sly', 'Solyc09g075280.2' => 'sly', 'Solyc12g007000.3' => 'sly', 'Solyc12g096290.3' => 'sly', 'Sopen06g003920' => 'spe', 'Sopen09g030040' => 'spe', 'Sopen09g030050' => 'spe', 'Sopen09g030060' => 'spe', 'Sopen09g030070' => 'spe', 'Sopen12g002970' => 'spe', 'Sopen12g032150' => 'spe', 'Sp1g01790' => 'spa', 'Sp1g14200' => 'spa', 'Sp4g23250' => 'spa', 'Sp5g05910' => 'spa', 'Sp6g02230' => 'spa', 'Sp6g02240' => 'spa', 'Sp6g02250' => 'spa', 'Sp6g24800' => 'spa', 'TAR362G0026' => 'tar', 'TAR362G0977' => 'tar', 'TAR362G1020' => 'tar', 'TAR365G0101' => 'tar', 'TAR365G0697' => 'tar', 'TAR376G0321' => 'tar', 'TAR623G0479' => 'tar', 'TAR623G1493' => 'tar', 'TAR636G0591' => 'tar', 'TAR636G2723' => 'tar', 'TAR636G3052' => 'tar', 'TAR636G3149' => 'tar', 'THA.LOC104801279' => 'tha', 'THA.LOC104811106' => 'tha', 'THA.LOC104817486' => 'tha', 'THA.LOC104818579' => 'tha', 'THA.LOC104825966' => 'tha', 'THA.LOC104825967' => 'tha', 'Thecc.01G302600' => 'tca', 'Thecc.01G302800' => 'tca', 'Thecc.01G302900' => 'tca', 'Thecc.01G303000' => 'tca', 'Thecc.05G314600' => 'tca', 'Thecc.08G185600' => 'tca', 'Thecc.09G113800' => 'tca', 'Thhalv10005795m.g' => 'esa', 'Thhalv10008908m.g' => 'esa', 'Thhalv10009715m.g' => 'esa', 'Thhalv10014922m.g' => 'esa', 'Thhalv10028425m.g' => 'esa', 'Thhalv10029020m.g' => 'esa', 'Thhalv10029529m.g' => 'esa', 'TPR.G19775' => 'tpr', 'TPR.G31444' => 'tpr', 'TPR.G33958' => 'tpr', 'TPR.G33978' => 'tpr', 'TPR.G40182' => 'tpr', 'TPR.G9597' => 'tpr', 'TPR.G9601' => 'tpr', 'TWI14G0471' => 'twi', 'TWI14G1305' => 'twi', 'TWI34G1027' => 'twi', 'TWI36G0209' => 'twi', 'TWI53G1144' => 'twi', 'TWI56G0001' => 'twi', 'TWI59G0509' => 'twi', 'TWI59G0697' => 'twi', 'TWI59G0810' => 'twi', 'TWI63G1370' => 'twi', 'TWI74G1072' => 'twi', 'unitig_0.g673' => 'ugi', 'unitig_0.g674' => 'ugi', 'unitig_22.g5238' => 'ugi', 'unitig_26.g10175' => 'ugi', 'unitig_736.g22283' => 'ugi', 'unitig_899.g15091' => 'ugi', 'vmacro02441' => 'vma', 'vmacro15149' => 'vma', 'vmacro15150' => 'vma', 'vmacro18655' => 'vma', 'vmacro20664' => 'vma', 'VMungo0331G0879' => 'vmu', 'VMungo0464G2190' => 'vmu', 'VMungo0720G1450' => 'vmu', 'VMungo0720G2342' => 'vmu', 'VMungo0720G3090' => 'vmu', 'VMungo1383G0726' => 'vmu', 'VMungo1383G2636' => 'vmu', 'Zm00001eb058890' => 'zma', 'Zm00001eb058900' => 'zma', 'Zm00001eb131510' => 'zma', 'Zm00001eb138460' => 'zma', 'Zm00001eb167960' => 'zma', 'Zm00001eb167980' => 'zma', 'Zm00001eb223060' => 'zma', 'Zm00001eb285690' => 'zma', 'Zm00001eb288350' => 'zma', 'Zm00001eb341010' => 'zma', 'Zm00001eb346540' => 'zma', 'Zm00001eb357640' => 'zma', 'Zm00001eb392990' => 'zma', 'Zm00001eb418600' => 'zma' ) $gf_id = 'HOM05D000657' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000657' ) $data_identifier = 'HOM05D000657' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 8, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 10, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 8, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 22, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 9, 'cansat' => (int) 8, 'chi' => (int) 9, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 10, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 1, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 11, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 13, 'qlo' => (int) 15, 'rch' => (int) 6, 'rsi' => (int) 11, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 4, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1